rs3758412 chr10:17228913 A>G

Sequence
tccccgcctgaccgcagccccgag[A/G]ccgccgcgcacctcctcccacgcc
ASB in cell types
K562 (myelogenous leukemia) MDA-MB-231 (breast adenocarcinoma)
ASB for transcription factors
BRD2_HUMAN EGR1_HUMAN CDN1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD2_HUMAN -0.13 1.22 0.920.01 2.00 n/a n/a
EGR1_HUMAN -0.62 1.54 1.000.02 1.50 n/a No Hit
CDN1B_HUMAN 0.19 1.45 0.990.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid

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