rs3759405 chr12:51048114 G>A
- Sequence
cccacaccagtggcataagaactc[G/A]ctccctctgggacaccctgtttcc
- ASB in cell types
- K562 (myelogenous leukemia) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line) brain prefrontal cortex region tissues
- ASB for transcription factors
- CTCF_HUMAN BRD4_HUMAN OLIG2_HUMAN NELFA_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.55 | 0.78 | 1.17 | n/a | No Hit | |||
| BRD4_HUMAN | 1.63 | 0.86 | 1.52 | n/a | n/a | |||
| OLIG2_HUMAN | 1.92 | 1.54 | 1.00 | n/a | No Hit | |||
| NELFA_HUMAN | -2.58 | 1.91 | 2.00 | n/a | n/a | |||
| CDK9_HUMAN | 1.72 | 1.01 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood