rs3759408 chr12:47779438 A>G

Sequence
atagcccatacaagcactcctgat[A/G]ttgggacccattagtctgtgctca
ASB in cell types
CD14+ monocytes HCT-116 (colon carcinoma)
ASB for transcription factors
STAT1_HUMAN SMC3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.37 n/a 0.031.00 3.00 n/a No Hit
SMC3_HUMAN 0.02 0.97 0.970.03 1.25 n/a n/a
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Esophagus_Muscularis,  Lung,  Skin_Sun_Exposed_Lower_leg,  Thyroid

Download