rs3759667 chr14:55191703 A>G

Sequence
ccgtgcgatatttgaattgattga[A/G]aggtgaagggccagttcaaaagat
ASB in cell types
HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
RBM25_HUMAN HCFC1_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN n/a 0.78 1.001.9·10-4 2.00 n/a n/a
HCFC1_HUMAN 2.54 -1.75 0.021.00 2.00 n/a n/a
TYY1_HUMAN 0.27 1.44 0.890.03 1.60 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP circulating galectin-3 levels,  hypertension (early onset hypertension),  partial epilepsy
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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