rs3760198 chr17:74358899 A>G
- Sequence
ggccatgtgactaactgctggtca[A/G]tgggcgcagtttgggatttgcagg
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma)
- ASB for transcription factors
- NR2C1_HUMAN USF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 1.14 | -3.43 | 2.50 | -1.55 | Weak Concordant | |||
| USF1_HUMAN | 1.66 | -0.04 | 2.12 | n/a | No Hit |
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Motif analysis
