rs3760638 chr19:40444440 C>T
- Sequence
attggctgggcggagccatccgcc[C/T]gtgccccgagacgccggatccgcc
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes breast tumor 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN PKNX1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.18 | 0.48 | 1.67 | n/a | No Hit | |||
| STAT1_HUMAN | 2.54 | 0.53 | 1.67 | n/a | No Hit | |||
| PKNX1_HUMAN | -0.35 | 1.82 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.66 | 0.03 | 2.00 | n/a | No Hit | |||
| GMEB1_HUMAN | n/a | 2.48 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood