rs3760659 chr19:41263199 A>C
- Sequence
acgtgtggctcaggaggcagtggg[A/C]gtctgcatcatgtatcccgattgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells GM02255 (Lymphoblastoid Cell Lines) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- IKZF2_HUMAN HTF4_HUMAN TBX21_HUMAN EP300_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -1.12 | 1.33 | 1.00 | n/a | n/a | |||
| HTF4_HUMAN | -0.28 | 1.95 | 1.50 | n/a | No Hit | |||
| TBX21_HUMAN | -0.90 | 1.52 | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | 0.01 | 2.02 | 1.45 | n/a | n/a | |||
| BHE40_HUMAN | -2.46 | 1.68 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Spleen, Thyroid, Whole_Blood