rs3761175 chr20:49916837 G>C

Sequence
ttacaatattgcattttcacgtgg[G/C]gctgcttaaaaaagtcccctccag
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
SIN3A_HUMAN ESR1_HUMAN SNIP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SIN3A_HUMAN n/a 2.62 1.004.3·10-3 4.00 n/a n/a
ESR1_HUMAN 0.67 1.05 0.940.03 2.67 n/a No Hit
SNIP1_HUMAN n/a 3.09 1.000.04 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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