rs3761219 chr20:3795721 T>C

Sequence
ctcccacctcctacgctgggcgct[T/C]ctcctgcgaatgacgttttgctgc
ASB in cell types
HEK293 (embryonic kidney) primary B-CLL cells monocytes from periferal blood
ASB for transcription factors
SP2_HUMAN ZBT26_HUMAN CTCF_HUMAN ZN335_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SP2_HUMAN n/a 4.08 1.001.2·10-6 2.00 n/a No Hit
ZBT26_HUMAN n/a 3.49 1.003.4·10-4 2.00 n/a No Hit
CTCF_HUMAN 0.56 0.95 0.847.4·10-3 1.22 n/a No Hit
ZN335_HUMAN n/a 2.94 1.000.01 2.00 n/a No Hit
ZN629_HUMAN n/a 3.06 1.000.01 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Whole_Blood

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