rs3761220 chr20:3795753 C>G

Sequence
gaatgacgttttgctgctgctcag[C/G]gcagccagtcgcggaggcggggag
ASB in cell types
HEK293 (embryonic kidney) foreskin keratinocyte
ASB for transcription factors
ZBT26_HUMAN GLIS1_HUMAN ZN335_HUMAN ZN629_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT26_HUMAN n/a 3.17 1.003.6·10-5 2.00 n/a No Hit
GLIS1_HUMAN n/a 3.12 1.003.7·10-3 2.00 n/a No Hit
ZN335_HUMAN -2.00 2.94 1.009.5·10-3 2.00 n/a No Hit
ZN629_HUMAN -2.06 2.84 1.000.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Esophagus_Muscularis,  Testis,  Thyroid,  Whole_Blood

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