rs3761301 chr20:62862669 C>T
- Sequence
cctgtagcagtcagcacactgccc[C/T]tcccccgcctgcagccactaatct
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- NCOR1_HUMAN MTG8R_HUMAN IKZF1_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NCOR1_HUMAN | 1.33 | -0.42 | 2.00 | n/a | n/a | |||
| MTG8R_HUMAN | 1.80 | n/a | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.42 | -0.11 | 1.67 | n/a | n/a | |||
| KDM1A_HUMAN | 1.38 | n/a | 2.00 | n/a | n/a | |||
| TAL1_HUMAN | 1.29 | 0.20 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 8
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg