rs3761759 chr5:142108799 G>C
- Sequence
ccccaggggccgcgtcggagcctc[G/C]gcggcggcggcggtgcttacagcc
- ASB in cell types
- tibial nerve HepG2 (hepatoblastoma) fetal bone marrow-derived mononuclear cells breast tumor
- ASB for transcription factors
- TYY1_HUMAN CTCF_HUMAN KMT2A_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 0.16 | 3.88 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 1.96 | 0.79 | 1.25 | n/a | No Hit | |||
| KMT2A_HUMAN | 2.08 | -0.00 | 1.10 | -2.32 | Concordant | |||
| ESR1_HUMAN | 2.28 | -0.07 | 1.90 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood