rs3762567 chr2:206765614 C>T
- Sequence
agcgcagcttctcggggaagctgt[C/T]atggctgctcctgtacgtagtcac
- ASB in cell types
- breast tumor primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney)
- ASB for transcription factors
- ESR1_HUMAN ZN600_HUMAN ZN341_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.78 | 1.21 | 2.00 | n/a | No Hit | |||
| ZN600_HUMAN | -2.35 | 2.66 | 1.00 | n/a | n/a | |||
| ZN341_HUMAN | n/a | 2.30 | 1.00 | 2.49 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg