rs3763067 chr5:172772620 G>A
- Sequence
gctgtgcgagctgtatcaccagtg[G/A]caacttctgcatttgcctcgctta
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) CD14+ monocytes
- ASB for transcription factors
- SPI1_HUMAN JUNB_HUMAN STAT1_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.19 | -0.16 | 1.76 | -0.28 | Weak Concordant | |||
| JUNB_HUMAN | -0.53 | 1.88 | 2.12 | n/a | No Hit | |||
| STAT1_HUMAN | 1.61 | -0.27 | 2.00 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.23 | n/a | 3.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.82 | 0.56 | 1.10 | n/a | No Hit |
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Motif analysis
