rs3764510 chr18:74499611 A>G

Sequence
tgtaaaaatttttattaaagtacc[A/G]gtaaaactaaaagtgcctactttt
ASB in cell types
22RV1 (prostate carcinoma) adult erythroblasts
ASB for transcription factors
ANDR_HUMAN RBBP5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.76 -0.51 5.9·10-41.00 1.83 -0.39 Weak Concordant
RBBP5_HUMAN 1.86 -4.53 0.031.00 2.00 n/a n/a
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Motif analysis

ANDR_HUMAN Weak Concordant
ANDR_HUMAN pic

Genetic associations

GRASP cystatin c in serum,  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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