rs3765065 chr2:172555526 T>A
- Sequence
gggccacacgtcccagtgttcagc[T/A]ttcgtatttacgtactactgtttg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.00 | -1.38 | 2.50 | -1.73 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP hdl cholesterol, ldl cholesterol change with statins, suicide attempts in bipolar disorder, total cholesterol, total cholesterol change with statins
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood