rs3765425 chr1:24373382 G>C
- Sequence
cctccccagtggcccctaatggca[G/C]ctggggtatacgaatgtgcacatt
- ASB in cell types
- MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.42 | -0.91 | 1.00 | -1.30 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, hdl cholesterol change with statins, ldl cholesterol, ldl cholesterol change with statins, total cholesterol change with statins, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis