rs3766212 chr1:46718509 C>T

Sequence
agggcacgcttaaaatacgtgttt[C/T]ggacctccggagcaagatttccaa
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
SMCA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA4_HUMAN 2.65 n/a 7.1·10-31.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP crohns disease, combined control dataset,  hdl cholesterol,  irritible bowel syndrome
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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