rs3768500 chr1:109091891 A>G

Sequence
agacactggttatatataatattc[A/G]tttggagcttcctgggaagtcaga
ASB in cell types
K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
TF65_HUMAN P53_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 1.56 n/a 4.6·10-31.00 2.50 n/a No Hit
P53_HUMAN n/a 3.19 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol
GTEx eQTL Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Thyroid

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