rs3768884 chr2:224585651 G>C
- Sequence
ggaagtgggaggggccggcggggc[G/C]gggaagcggaaagggggcgtggct
- ASB in cell types
- A549 (lung carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) BEAS-2B (bronchial epithelium) NOMO-1 (acute monocytic leukemia)
- ASB for transcription factors
- REST_HUMAN GCR_HUMAN CDK9_HUMAN ONEC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | -1.72 | 3.54 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | -0.67 | 1.70 | 1.00 | n/a | No Hit | |||
| CDK9_HUMAN | -0.40 | 1.82 | 1.00 | n/a | n/a | |||
| ONEC2_HUMAN | -2.52 | 2.62 | 1.00 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.84 | 1.32 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Whole_Blood