rs377119 chr16:89574838 T>G
- Sequence
tcctcctcccaggccgaggctgcc[T/G]gtgctgcctcccgccggcggggcc
- ASB in cell types
- glioblastoma cells GM10847 (female B-cells Lymphoblastoid Cell Lines) ID00015 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN STAG2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.42 | 1.35 | 1.44 | -0.33 | Weak Discordant | |||
| IKZF1_HUMAN | 1.59 | -1.41 | 1.00 | n/a | n/a | |||
| STAG2_HUMAN | -1.69 | 2.09 | 1.00 | n/a | n/a |
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Motif analysis
