rs3772144 chr3:39406933 T>C
- Sequence
gcccgcacgtggccaggctcgggc[T/C]ggcgggttcccagagtgccccggg
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- TYY1_HUMAN STAT1_HUMAN MAX_HUMAN SP130_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.78 | -4.33 | 1.75 | n/a | No Hit | |||
| STAT1_HUMAN | 3.25 | n/a | 2.00 | -0.12 | Weak Concordant | |||
| MAX_HUMAN | 1.20 | 0.69 | 1.25 | n/a | No Hit | |||
| SP130_HUMAN | 2.01 | -1.75 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood