rs3772146 chr3:39406713 C>T
- Sequence
gtacataaggacgtcatttcctgc[C/T]gcctgtcttttccgtgctacctgc
- ASB in cell types
- tibial nerve adult erythroblasts CD14+ monocytes HEK293 (embryonic kidney)
- ASB for transcription factors
- ATF7_HUMAN CLOCK_HUMAN STAT1_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -4.00 | 3.68 | 1.00 | n/a | No Hit | |||
| CLOCK_HUMAN | n/a | 3.26 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.17 | -1.10 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | -0.32 | 1.08 | 1.43 | n/a | n/a | |||
| HCFC1_HUMAN | 1.86 | n/a | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood