rs3772147 chr3:39406572 G>A
- Sequence
tgccgctaccggctacagcccaga[G/A]gcccgctcctgcggcgcaagcccg
- ASB in cell types
- foreskin keratinocyte naive IgD+ B cells CD14+ monocytes fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- CTCF_HUMAN FOXP1_HUMAN E2F1_HUMAN KMT2A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.29 | 0.51 | 1.30 | n/a | No Hit | |||
| FOXP1_HUMAN | 3.08 | -4.94 | 2.00 | n/a | No Hit | |||
| E2F1_HUMAN | -0.24 | 1.41 | 1.21 | n/a | No Hit | |||
| KMT2A_HUMAN | 3.07 | n/a | 1.50 | -1.00 | Weak Concordant | |||
| STAT1_HUMAN | 2.76 | -0.03 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood