rs3774997 chr4:102825596 C>T

Sequence
ctaaaccaccggaggtggaggttc[C/T]gctcactcccagagctccgaaaaa
ASB in cell types
22RV1 (prostate carcinoma)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
22RV1 (prostate carcinoma) 2.73 n/a 0.021.00 2.00
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  infant head circumference,  ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid

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