rs3776069 chr5:149935724 T>C
- Sequence
cttaaatttacaagaatcctcctt[T/C]ctgtttattggtagcactgtgagg
- ASB in cell types
- 22RV1 (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| 22RV1 (prostate carcinoma) | 2.30 | n/a | 4.00 |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, asthma, hdl cholesterol, ldl cholesterol, ldl cholesterol change with statins, major depressive disorder, prop taste detection threshold, serum creatinine, type 1 diabetes
GTEx eQTL Breast_Mammary_Tissue, Esophagus_Mucosa, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg