rs3776078 chr5:150144616 C>G

Sequence
acaccccctcacccgtcagagtgc[C/G]tgtgcttgggggtgggggcagcga
ASB in cell types
SUP-B15 (Childhood B acute lymphoblastic leukemia) K562 (myelogenous leukemia) HASM2 (Human airway smooth muscle 2)
ASB for transcription factors
GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 2.75 -0.39 5.3·10-51.00 1.36 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  cystatin c in serum,  years of education
GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Nerve_Tibial

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