rs3778253 chr6:2958314 G>A

Sequence
tctcaggctcccagggaaccacca[G/A]gtccagagggcagaccacagcagt
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.31 -1.58 7.5·10-31.00 2.00 1.15 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

ANDR_HUMAN Weak Discordant
ANDR_HUMAN pic

Genetic associations

GRASP diabetic retinopathy in type 2 diabetes mellitus,  years of education
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellar_Hemisphere,  Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Whole_Blood

Download