rs3778302 chr6:136427613 C>A
- Sequence
atgaaccatttattcactctattg[C/A]tcaattcttgttgacaaaacataa
- ASB in cell types
- MOLM-13(acute monocytic leukemia(AML), Homo sapiens) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- CDK8_HUMAN CEBPA_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK8_HUMAN | 3.19 | n/a | 2.00 | n/a | n/a | |||
| CEBPA_HUMAN | 3.16 | n/a | 2.00 | -4.34 | Concordant | |||
| SMCA4_HUMAN | 2.02 | -0.96 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid