rs3778458 chr6:125198993 T>G
- Sequence
aagatgagatgagtttagctgatt[T/G]ccttcatccttaggaataagaaca
- ASB in cell types
- A549 (lung carcinoma) embryonic kidney
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.10 | 2.22 | 1.35 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, chronic kidney disease, hdl cholesterol, maternal transmission distortion, personality disorders (pd) - cluster c, serum creatinine, transmission distortion, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood