rs3779338 chr7:78040538 G>T

Sequence
taaggtcaccccacacgggttcag[G/T]tggtggtccctcgactgggaatga
ASB in cell types
GM12892 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) PANC1 (pancreatic ductal adenocarcinoma) HEK293 (embryonic kidney)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.02 1.88 1.002.7·10-3 1.35 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  infant head circumference,  ldl cholesterol,  rheumatoid arthritis,  total cholesterol

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