rs3781071 chr10:12782644 G>A
- Sequence
gttccttcccccaccagcaggggg[G/A]gcatcgcttcgtcccacttcctgg
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) MCF7 (Invasive ductal breast carcinoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN SMC1A_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 1.34 | 1.34 | 1.65 | Weak Concordant | |||
| SPI1_HUMAN | -0.07 | 1.50 | 1.24 | n/a | No Hit | |||
| SMC1A_HUMAN | 0.38 | 1.76 | 1.33 | n/a | n/a | |||
| SMCA4_HUMAN | 1.09 | 1.33 | 1.22 | n/a | n/a | |||
| ELF1_HUMAN | 0.21 | 0.99 | 1.40 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP decrease in fev1 (in nonasthmatic participants), lung function, forced expiratory volume in 1 second (fev1) percent predicted (in nonasthmatic participants), parkinsons disease