rs3781310 chr10:71333359 C>T

Sequence
cctatgtgcctgtgtttctgtgca[C/T]gtctgtgcctgtctgcatgcaggc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) keratinocytes
ASB for transcription factors
P63_HUMAN IKZF2_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P63_HUMAN -0.18 1.78 1.003.7·10-4 1.19 6.53 Concordant
IKZF2_HUMAN -0.73 2.04 1.002.8·10-3 1.00 n/a n/a
IKZF1_HUMAN -0.40 1.31 1.000.03 1.25 n/a n/a
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Motif analysis

P63_HUMAN Concordant
P63_HUMAN pic

Genetic associations

GRASP college completion,  cystatin c in serum,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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