rs3782270 chr12:124423368 G>A
- Sequence
gctggctgctagtgaggctggact[G/A]tgggctcccacggagggaggctga
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells) SYO-1(Biphasic synovial sarcoma)
- ASB for transcription factors
- NFIA_HUMAN SSXT_HUMAN E2F8_HUMAN TEAD3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIA_HUMAN | -2.61 | 3.00 | 1.00 | n/a | No Hit | |||
| SSXT_HUMAN | -0.18 | 2.49 | 1.00 | n/a | n/a | |||
| E2F8_HUMAN | -0.47 | 2.26 | 1.33 | n/a | No Hit | |||
| TEAD3_HUMAN | -2.45 | 2.39 | 1.00 | -5.95 | Discordant | |||
| SKI_HUMAN | -2.24 | 2.36 | 1.00 | n/a | n/a |
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Motif analysis
