rs3782554 chr12:68223241 C>G
- Sequence
acactgataggcttgaggtgggag[C/G]agggaagaaggaaagcgcggagtt
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts Th1-cells
- ASB for transcription factors
- TBX21_HUMAN GATA1_HUMAN SPI1_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -1.49 | 2.82 | 1.00 | 0.18 | Weak Concordant | |||
| GATA1_HUMAN | -5.08 | 2.88 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 0.13 | 1.70 | 1.23 | 1.20 | Weak Concordant | |||
| KDM1A_HUMAN | -1.83 | 2.49 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 0.17 | 1.78 | 1.54 | n/a | n/a |
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Motif analysis
