rs3782555 chr12:68223190 G>T
- Sequence
ttgctttaccccagggcataaact[G/T]cacagcttgtaagacaactgatgc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) CTV-1 (Adult T acute lymphoblastic leukemia) Th1-cells
- ASB for transcription factors
- TBX21_HUMAN SMCA4_HUMAN ZN626_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -1.58 | 2.44 | 1.00 | 3.72 | Concordant | |||
| SMCA4_HUMAN | 0.10 | 1.86 | 1.36 | n/a | n/a | |||
| ZN626_HUMAN | -2.60 | 2.70 | 1.00 | n/a | No Hit |
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Motif analysis
