rs3783852 chr14:89365071 C>T

Sequence
tgctgtgacagagttgtgtggggg[C/T]gggaattacaaaagaaacgcagaa
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN CBP_HUMAN TF65_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.19 n/a 0.011.00 2.00 n/a No Hit
CBP_HUMAN 2.54 -1.75 0.021.00 2.00 n/a n/a
TF65_HUMAN 1.97 n/a 0.041.00 3.00 1.20 Weak Discordant
STAG1_HUMAN 1.53 -0.10 0.041.00 1.00 n/a n/a
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Motif analysis

TF65_HUMAN Weak Discordant
TF65_HUMAN pic

Genetic associations

GRASP college completion,  hdl cholesterol,  ldl cholesterol,  mitral annular calcium,  premature ovarian failure,  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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