rs3784789 chr15:74790211 C>G
- Sequence
gagttcccccaggtcttttgtgca[C/G]ttcccttttcagtgggtattttta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) SEM (childhood B acute lymphoblastic leukemia) CD14+ monocytes germinal center CD77+ B cells
- ASB for transcription factors
- SPI1_HUMAN ERG_HUMAN FOXK2_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.95 | 1.51 | 1.72 | -2.53 | Concordant | |||
| ERG_HUMAN | 0.97 | n/a | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | n/a | 3.23 | 3.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.62 | 0.17 | 2.00 | 1.06 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, body mass index (bmi), coronary artery disease (cad), diastolic blood pressure (dbp), homa-b, infant head circumference, ldl cholesterol, systolic blood pressure (sbp), total cholesterol, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood