rs3785457 chr17:38742792 C>T
- Sequence
tctctgagcgtgtgtaatatccat[C/T]ctgtgtacgtgccatctgggcctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- PKNX1_HUMAN TCF21_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 1.14 | n/a | 1.50 | n/a | No Hit | |||
| TCF21_HUMAN | 1.78 | -4.45 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.18 | -0.22 | 2.50 | 0.25 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP bipolar disorder in alcoholics, hdl cholesterol, hypertension (early onset hypertension), microalbuminuria, neuroticism, triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood