rs378740 chr9:134025754 C>A

Sequence
gcaggcatcccaggaggggaggtc[C/A]ctgacgctgcgcagctgggaaggc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) keratinocytes
ASB for transcription factors
SNAI2_HUMAN ANDR_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN 2.19 -4.10 0.021.00 1.50 n/a No Hit
ANDR_HUMAN 2.25 -0.44 0.020.99 2.00 n/a No Hit
STAG1_HUMAN 1.37 0.37 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Stomach,  Testis,  Thyroid,  Whole_Blood

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