rs379402 chr5:141513923 C>G
- Sequence
aagaacacaaagacagagccactg[C/G]ggttatctggctggtcagcaaggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HKC8 (kidney proximal tubule cell line) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- IKZF2_HUMAN RUNX3_HUMAN CDK8_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 1.75 | -0.68 | 1.00 | n/a | n/a | |||
| RUNX3_HUMAN | 2.72 | -4.79 | 1.50 | -2.54 | Concordant | |||
| CDK8_HUMAN | 1.58 | 0.21 | 1.00 | n/a | n/a | |||
| PKNX1_HUMAN | 2.27 | n/a | 1.00 | 1.43 | Weak Discordant |
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Motif analysis
