rs379471 chr9:134025527 G>A

Sequence
ccgctgcccgcatctccgaggccc[G/A]cgacgagcggtgactggggcgggc
ASB in cell types
22RV1 (prostate carcinoma) HepG2 (hepatoblastoma)
ASB for transcription factors
ANDR_HUMAN IKZF1_HUMAN STAG1_HUMAN SP130_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.26 -1.17 6.6·10-31.00 2.00 n/a No Hit
IKZF1_HUMAN -1.86 2.40 1.000.01 1.00 n/a n/a
STAG1_HUMAN 1.28 0.69 0.031.00 1.00 n/a n/a
SP130_HUMAN -1.70 2.10 1.000.04 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Stomach,  Testis,  Thyroid,  Whole_Blood

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