rs3795302 chr1:24120626 C>T

Sequence
tgcagtccttatcatgctgctttg[C/T]tccggtgaggagcgcacccatggc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MGAP_HUMAN ETV1_HUMAN ARI1B_HUMAN ZSC29_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MGAP_HUMAN -3.06 3.12 1.001.3·10-3 1.00 n/a No Hit
ETV1_HUMAN n/a 2.94 1.005.3·10-3 1.50 3.83 Concordant
ARI1B_HUMAN n/a 2.76 1.005.9·10-3 1.00 n/a n/a
ZSC29_HUMAN -2.34 2.14 1.000.02 1.25 n/a No Hit
VEZF1_HUMAN -1.78 1.74 1.000.04 1.25 n/a No Hit
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Motif analysis

ETV1_HUMAN Concordant
ETV1_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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