rs3806246 chr1:33080995 A>G
- Sequence
gccaggcctccgggggagaagact[A/G]cagtaagggcgagcagagctgaat
- ASB in cell types
- LNCaP (prostate carcinoma) HepG2 (hepatoblastoma) breast tumor neural cell
- ASB for transcription factors
- TBP_HUMAN ESR1_HUMAN RAD21_HUMAN NC2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | -0.18 | 1.95 | 1.44 | n/a | No Hit | |||
| ESR1_HUMAN | 3.15 | n/a | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | 0.17 | 2.34 | 1.17 | n/a | n/a | |||
| NC2A_HUMAN | -1.70 | 2.01 | 1.00 | n/a | n/a | |||
| RFX3_HUMAN | -1.71 | 2.09 | 1.00 | n/a | No Hit |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP diabetic retinopathy in type 2 diabetes mellitus, salmonella-induced pyroptosis, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood