rs3813571 chr15:78540450 G>T
- Sequence
tgcgcatgcgcgggggccatatta[G/T]cagcggttattcggtgagcggtgg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN TYY1_HUMAN BRD3_HUMAN CLOCK_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.92 | 0.47 | 1.00 | n/a | No Hit | |||
| TYY1_HUMAN | 0.87 | 0.02 | 1.25 | n/a | No Hit | |||
| BRD3_HUMAN | 1.39 | -0.77 | 1.00 | n/a | n/a | |||
| CLOCK_HUMAN | n/a | 2.62 | 2.00 | n/a | No Hit | |||
| HTF4_HUMAN | 1.85 | n/a | 1.50 | -3.17 | Concordant |
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Motif analysis
Genetic associations
GRASP chronic obstructive pulmonary disease (copd), coronary artery disease (cad), combined control dataset, myocardial infarction (mi), salmonella-induced pyroptosis, simpson-angus scale
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood