rs3827555 chr3:196082209 G>C
- Sequence
gcgaggtgctctgacagatcgccc[G/C]gggggcggggatgcgcgcgcagcg
- ASB in cell types
- adult erythroblasts HepG2 (hepatoblastoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RBBP5_HUMAN KDM6A_HUMAN TYY1_HUMAN ZBT25_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | n/a | 3.25 | 2.00 | n/a | n/a | |||
| KDM6A_HUMAN | -0.31 | 2.57 | 1.33 | n/a | n/a | |||
| TYY1_HUMAN | 0.57 | 2.59 | 1.25 | n/a | No Hit | |||
| ZBT25_HUMAN | -2.13 | 2.53 | 1.00 | n/a | n/a | |||
| MEN1_HUMAN | 1.60 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood