rs385540 chr10:117443100 G>C
- Sequence
ggggcagcacccaacctatgctca[G/C]gcaactggcgctttctcctgggac
- ASB in cell types
- A549 (lung carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) HeLa S3 (cervical adenocarcinoma) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN TF65_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.98 | 0.36 | 1.49 | n/a | No Hit | |||
| RAD21_HUMAN | 1.47 | -0.09 | 1.68 | n/a | n/a | |||
| TF65_HUMAN | 3.36 | -0.56 | 1.50 | n/a | No Hit | |||
| GABP1_HUMAN | 2.67 | -2.54 | 1.00 | n/a | n/a | |||
| TEAD3_HUMAN | 2.46 | -2.18 | 1.00 | n/a | No Hit |
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