rs386713 chr6:2841905 C>T

Sequence
cgctgctcttatagcaggcggaag[C/T]gtcacccgggccagcagccgcggg
ASB in cell types
CD14+ monocytes Th1-cells breast tumor adult erythroblasts
ASB for transcription factors
STAT1_HUMAN SPI1_HUMAN TBX21_HUMAN KDM6A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN n/a 3.25 1.003.7·10-5 2.00 n/a No Hit
SPI1_HUMAN -0.24 2.13 1.003.5·10-4 2.00 3.35 Concordant
TBX21_HUMAN -0.91 1.27 1.001.7·10-3 1.17 n/a No Hit
KDM6A_HUMAN 2.73 n/a 0.011.00 2.00 n/a n/a
TYY1_HUMAN 1.50 0.57 0.011.00 2.00 n/a No Hit
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Motif analysis

SPI1_HUMAN Concordant
SPI1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Pituitary,  Testis,  Thyroid,  Whole_Blood

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