rs38744 chr7:111408523 A>G

Sequence
ataaagatttttctagtgcatcat[A/G]tcacagaactgcaagcatatcatt
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN BCOR_HUMAN ERG_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -0.24 2.43 1.001.7·10-19 1.57 n/a No Hit
BCOR_HUMAN -4.08 2.36 1.000.04 1.50 n/a n/a
ERG_HUMAN -1.96 2.24 1.000.04 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  hypertension (early onset hypertension)
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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