rs388679 chr9:105232500 C>T

Sequence
ccagcctgagcaacagaacaagac[C/T]ccaaatgagaaaacaaaacaaaac
ASB in cell types
LHSAR (prostate epithelial cells)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
LHSAR (prostate epithelial cells) -0.25 1.41 1.000.04 1.50
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  homa-b,  obesity with early age of onset (age >2),  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Heart_Atrial_Appendage,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

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